Skip to main content
Press slash or control plus K to focus the search. Use the arrow keys to navigate results and press enter to open a threat.
Reconnecting to live updates…

CVE-2026-31968: CWE-121: Stack-based Buffer Overflow in samtools htslib

0
High
Published: Wed Mar 18 2026 (03/18/2026, 19:38:11 UTC)
Source: CVE Database V5
Vendor/Project: samtools
Product: htslib

Description

HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. For the `VARINT` and `CONST` encodings, incomplete validation of the context in which the encodings were used could result in up to eight bytes being written beyond the end of a heap allocation, or up to eight bytes being written to the location of a one byte variable on the stack, possibly causing the values to adjacent variables to change unexpectedly. Depending on the data stream this could result either in a heap buffer overflow or a stack overflow. If a user opens a file crafted to exploit this issue it could lead to the program crashing, overwriting of data structures on the heap or stack in ways not expected by the program, or changing the control flow of the program. It may be possible to use this to obtain arbitrary code execution. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.

Technical Details

Data Version
5.2
Assigner Short Name
GitHub_M
Date Reserved
2026-03-10T15:40:10.485Z
Cvss Version
4.0
State
PUBLISHED

Threat ID: 69bb0078771bdb1749c07554

Added to database: 3/18/2026, 7:43:52 PM

Last updated: 3/18/2026, 7:44:07 PM

Views: 1

Community Reviews

0 reviews

Crowdsource mitigation strategies, share intel context, and vote on the most helpful responses. Sign in to add your voice and help keep defenders ahead.

Sort by
Loading community insights…

Want to contribute mitigation steps or threat intel context? Sign in or create an account to join the community discussion.

Actions

Please log in to the Console to use AI analysis features.

Need more coverage?

Upgrade to Pro Console in Console -> Billing for AI refresh and higher limits.

For incident response and remediation, OffSeq services can help resolve threats faster.

Latest Threats

Breach by OffSeqOFFSEQFRIENDS — 25% OFF

Check if your credentials are on the dark web

Instant breach scanning across billions of leaked records. Free tier available.

Scan now
OffSeq TrainingCredly Certified

Lead Pen Test Professional

Technical5-day eLearningPECB Accredited
View courses